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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48034287_48035678_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48034287 - 48035678
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTGTTATTAATA
Flanking Amino Acid:
EWCHCFGIKEEDINENLLF*
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.9
0.72
0.9
76.5
37.3
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
60.5
0.33
1.6
67.54
39.5

Associated Gene:

Gene:
SPARCL1
Ensembl Gene ID:
ENSAPLG00000003209
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003262
48023336 - 48035707
12372