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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48042003_48042383_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48042003 - 48042383
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CTTCCTGCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAA
U12 Branch Point Sequence:
CAGCACACAACC
Flanking Amino Acid:
SRLVLWDVDTHGLRETAEEC
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.3
50
46.7
Major BPS
49.3
-0
0.9
56.6
29.3
Major PPT
69.3
0.43
0.8
61.6
34.9
Minor 5ss
34.6
-1.7
3.6
46.7
48.7
Minor BPS
41.9
-0.6
1.9
47.78
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023894
48040334 - 48046917
6584