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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48042492_48044056_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48042492 - 48044056
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
AAACCCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAAAC
Flanking Amino Acid:
REEIYSAAEKTTRAFLPAMM
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.4
0.44
1
58.7
41.9
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
59.6
0.28
1.8
70.86
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023894
48040334 - 48046917
6584