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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48044164_48045242_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48044164 - 48045242
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCTCACCA
Flanking Amino Acid:
HFVTSFMVAYCSSKFAAVGF
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.1
0.7
0.8
75.1
34.6
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
69.1
0.6
1.8
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023894
48040334 - 48046917
6584