About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48045381_48045648_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48045381 - 48045648
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCATTCTTAAAT
Flanking Amino Acid:
NTGFVKNPRTRLGRILEVDE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.8
0.67
0.8
77.9
29.3
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
72.7
0.79
1.3
81.73
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023894
48040334 - 48046917
6584