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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48045766_48046829_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48045766 - 48046829
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCTTAAATT
Flanking Amino Acid:
PQLSIALFTDMLIPERVSRF
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
63.2
0.49
1.6
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023894
48040334 - 48046917
6584