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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48057628_48058426_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48057628 - 48058426
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCCTCACCA
Flanking Amino Acid:
HFVTSFMVAYCSSKFAAVGF
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.1
0.7
0.8
75.1
34.6
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
69.1
0.6
1.8
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029297
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033772
48055847 - 48060021
4175