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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48058565_48058814_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48058565 - 48058814
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCGTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTGCTCTTATAT
Flanking Amino Acid:
NTGFVKNPSTRLGRILEVDE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
71.3
0.48
1.1
74.8
33.9
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
56.1
0.27
1.7
74.32
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029297
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033772
48055847 - 48060021
4175