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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48058932_48059933_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48058932 - 48059933
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATCCTAGATT
Flanking Amino Acid:
SNQSFALLLERLLPERALNY
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
67.5
0.63
1.7
83.64
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029297
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033772
48055847 - 48060021
4175