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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48073405_48073530_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
48073405 - 48073530
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCCTGTC
5'SS Class:
weak_major
3'SS Sequence:
TGTTGACAGCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTATTCATAATG
Flanking Amino Acid:
LAQVGQSEALEQVRSQEHQE
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
57.7
42
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
49.4
-0
1.2
46.8
44.6
Minor 5ss
35.8
-1.6
3.5
43
44.6
Minor BPS
56.8
0.08
1.7
61.75
40.1

Associated Gene:

Gene:
KLHL8
Ensembl Gene ID:
ENSAPLG00000003622
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003713
48070530 - 48082400
11871