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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48077965_48079799_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48077965 - 48079799
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATGGTTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGGTATTGATCC
Flanking Amino Acid:
WMMKASMNTKRRGIALASLG
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
71.7
0.49
0.9
69.9
40.9
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
46.2
-0.3
1.8
56.95
41.4

Associated Gene:

Gene:
KLHL8
Ensembl Gene ID:
ENSAPLG00000003622
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015991
48070530 - 48082400
11871
ENSAPLT00000003713
48070530 - 48082400
11871