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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48092854_48093709_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48092854 - 48093709
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CTAACATTGATG
Flanking Amino Acid:
VTQAPSPCVARSTGMPSPLS
Intron Amino Acid Position:
1028

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
76.2
0.65
1
67
39.8
Major PPT
86.5
0.82
0.7
81.2
23.9
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
48.5
-0.2
1.7
53.08
41.8

Associated Gene:

Gene:
AFF1
Ensembl Gene ID:
ENSAPLG00000004059
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004237
48090922 - 48136073
45152