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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48093754_48093849_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48093754 - 48093849
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
TTCCTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GCCAACAAAACT
Flanking Amino Acid:
YSRILNDHFKSSSRVTQAPS
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
81.5
0.71
0.8
76.5
32.1
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
41.8
-0.5
2
55.33
45.9

Associated Gene:

Gene:
AFF1
Ensembl Gene ID:
ENSAPLG00000004059
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004237
48090922 - 48136073
45152