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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48093944_48094550_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48093944 - 48094550
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTGTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TTTCTGTTCACA
Flanking Amino Acid:
SSHEKIFAVLCMRCQSLLHM
Intron Amino Acid Position:
982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
76
34.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
84.4
0.77
0.8
79.4
32.6
Minor 5ss
31
-2.2
3
38.4
41.9
Minor BPS
49.1
-0
2.4
72.02
40.3

Associated Gene:

Gene:
AFF1
Ensembl Gene ID:
ENSAPLG00000004059
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004237
48090922 - 48136073
45152