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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48113863_48114966_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48113863 - 48114966
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TTTTCTCTATCT
Flanking Amino Acid:
DVQCVEEILKEMTHSWPPPL
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
85.5
0.8
0.8
77.2
36.6
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
64.7
0.54
1.9
88.58
36.4

Associated Gene:

Gene:
AFF1
Ensembl Gene ID:
ENSAPLG00000004059
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031832
48110906 - 48132421
21516