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Intron Name: Anas_platyrhynchos_platyrhynchos_4_48131875_48132295_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

48131875 - 48132295

Intron Length:

421

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTCGGGCTG

5'SS Class:

weak_major

3'SS Sequence:

TCTTCTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGCTTTTTAAAT

Flanking Amino Acid:

PLFAEPYKVMTNKEDELSSR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.8

0.14

1.4

47.9

47.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

86.1

0.81

0.8

84.1

30.8

Minor 5ss

28.5

-2.5

3.5

35.2

42.4

Minor BPS

66.8

0.6

1.4

77.19

39.4

Associated Gene:

Gene:

AFF1

Ensembl Gene ID:

ENSAPLG00000004059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031832

48110906 - 48132421

21516