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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48131875_48132301_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48131875 - 48132301
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTTTTAAAT
Flanking Amino Acid:
NAPLFAEPYKTNKEDELSSR
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
66.8
0.6
1.4
77.19
39.4

Associated Gene:

Gene:
AFF1
Ensembl Gene ID:
ENSAPLG00000004059
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004237
48090922 - 48136073
45152