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Intron Name: Anas_platyrhynchos_platyrhynchos_4_48132410_48136052_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

48132410 - 48136052

Intron Length:

3643

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTTTAAGTT

5'SS Class:

weak_major

3'SS Sequence:

CTTGTACAATGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

CTTTCCTGAAGC

Flanking Amino Acid:

LAAQTLNDRNLLRIRER

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.6

0.04

1.2

37.8

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

47.6

-0.1

1.7

56.7

42.8

Minor 5ss

40.6

-1.1

3.5

61.3

43.6

Minor BPS

64.7

0.44

1.8

75.11

41.5

Associated Gene:

Gene:

AFF1

Ensembl Gene ID:

ENSAPLG00000004059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004237

48090922 - 48136073

45152