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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_481689_482492_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
481689 - 482492
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACTGTTTTAACT
Flanking Amino Acid:
TLPLIPYLLKMNLDSEKPAK
Intron Amino Acid Position:
1432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.8
0.58
0.8
74.5
35.5
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
67.6
0.63
1.4
77.06
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013744
474056 - 496680
22625