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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48251136_48253597_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48251136 - 48253597
Intron Length:
2462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAA
U12 Branch Point Sequence:
CAGTACATAACT
Flanking Amino Acid:
VRLVLGSLSGMDQLACNGDK
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
57.2
0.18
1
53.3
33.7
Major PPT
81.5
0.71
0.8
75.7
32.7
Minor 5ss
39.7
-1.2
3.1
51.1
45.2
Minor BPS
54.5
0.22
1.9
71.34
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028936
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044762
48250856 - 48268939
18084