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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48253784_48256174_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48253784 - 48256174
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGATTCTCACCT
Flanking Amino Acid:
GADHEVPQSQPIKLGDHLNS
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
71.7
0.49
1
71.3
39.5
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
54.3
0.21
1.8
73.65
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028936
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044762
48250856 - 48268939
18084