Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48256241_48260755_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48256241 - 48260755

Intron Length:

4515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATAC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCATTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TTGTGTTTCATT

Flanking Amino Acid:

SLSSLSDVEKVHIYSLGMTL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.8

81.2

26.3

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

79.6

0.67

0.8

74.1

35.4

Minor 5ss

38.2

-1.3

3.1

49.9

46.6

Minor BPS

50.4

0.09

2.2

74.76

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044762

48250856 - 48268939

18084