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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_482608_483939_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
482608 - 483939
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
GTGCCCTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
GYYPSNWQSNISVHALLVCN
Intron Amino Acid Position:
1394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.3
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77
0.61
0.9
73.1
37.2
Minor 5ss
43.8
-0.7
2.9
59.9
39.9
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013744
474056 - 496680
22625