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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4828766_4830725_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4828766 - 4830725
Intron Length:
1960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTTCTCACTC
Flanking Amino Acid:
LYMSIYPDVQEKVHAEIEAV
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
67
0.38
0.9
64.8
35.2
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
58.8
0.26
1.8
73.85
37.6

Associated Gene:

Gene:
CYP2U1
Ensembl Gene ID:
ENSAPLG00000007095
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007383
4825740 - 4834054
8315