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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48320544_48321161_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48320544 - 48321161
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CTGTTTGTGACT
Flanking Amino Acid:
EREHTIEEWKELIYKEVMNS
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
49.2
0.02
2
69.3
42.8

Associated Gene:

Gene:
MAPK10
Ensembl Gene ID:
ENSAPLG00000005856
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006079
48320449 - 48369477
49029