About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4832091_4832516_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4832091 - 4832516
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTCTTTCTAACT
Flanking Amino Acid:
KKEAFIPFGMGKRVCMGEQL
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
77.7
33.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
74.1
0.54
0.9
70
40.5
Minor 5ss
39.2
-1.2
3.1
48.1
47.5
Minor BPS
59.5
0.37
1.7
75.41
41.9

Associated Gene:

Gene:
CYP2U1
Ensembl Gene ID:
ENSAPLG00000007095
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007383
4825740 - 4834054
8315