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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48321226_48332549_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48321226 - 48332549
Intron Length:
11324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATTGTTTTATTT
Flanking Amino Acid:
VWYDPAEVEAPPPQIYDKQL
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.2
43.2
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
34
-1.8
2.9
42.1
44.4
Minor BPS
55.4
0.25
1.6
72.97
39.1

Associated Gene:

Gene:
MAPK10
Ensembl Gene ID:
ENSAPLG00000005856
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006079
48320449 - 48369477
49029