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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48334452_48341922_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
48334452 - 48341922
Intron Length:
7471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TACTTATGTTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
KGAVLFPGTDHIDQWNKVIE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
47.9
-0.1
1.4
49.4
42.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
75.8
0.58
1
73.6
40.5
Minor 5ss
90.3
1.36
0.9
85
24.7
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
MAPK10
Ensembl Gene ID:
ENSAPLG00000005856
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006079
48320449 - 48369477
49029