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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48341995_48349822_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48341995 - 48349822
Intron Length:
7828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTACCTTCATT
Flanking Amino Acid:
VILGMGYKENVDMWSVGCIM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
55.6
48.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
33.5
-1.9
3.7
47.3
48.1
Minor BPS
70.8
0.73
1.8
88.64
36.5

Associated Gene:

Gene:
MAPK10
Ensembl Gene ID:
ENSAPLG00000005856
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006079
48320449 - 48369477
49029