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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48353035_48355205_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48353035 - 48355205
Intron Length:
2171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTGTCTTACTC
Flanking Amino Acid:
VLMKCVNHKNIISLLNVFTP
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
78.3
0.7
1
80
32.1
Major PPT
83
0.74
0.8
80.1
32
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
61.7
0.35
1.7
73.1
38.8

Associated Gene:

Gene:
MAPK10
Ensembl Gene ID:
ENSAPLG00000005856
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006079
48320449 - 48369477
49029