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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4837209_4840733_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4837209 - 4840733
Intron Length:
3525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATATTTTAACT
Flanking Amino Acid:
GGLMGAGIAQIAAASGHTVV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.5
0.8
0.8
82.4
34
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
68.2
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
HADH
Ensembl Gene ID:
ENSAPLG00000007402
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007695
4837044 - 4855584
18541