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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4846209_4849300_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4846209 - 4849300
Intron Length:
3092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ATGTGCTTATCT
Flanking Amino Acid:
NPVPMMKLVEVIKTPMTSQK
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.9
0.76
0.8
75.9
38
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
58.5
0.35
2.1
78.11
44.3

Associated Gene:

Gene:
HADH
Ensembl Gene ID:
ENSAPLG00000007402
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007695
4837044 - 4855584
18541