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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48500512_48511092_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48500512 - 48511092
Intron Length:
10581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTCTCTTTCATG
Flanking Amino Acid:
KIKRCFSFRKGIFGQKLEDT
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.2
0.61
0.8
73.7
30.3
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
52.9
-0
1.8
57.98
44.9

Associated Gene:

Gene:
ARHGAP24
Ensembl Gene ID:
ENSAPLG00000006223
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026704
48480576 - 48511207
30632