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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48515284_48592661_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48515284 - 48592661
Intron Length:
77378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GGTTTCTAAAGT
Flanking Amino Acid:
PGKFLFEVVPGADRERMTAN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
53.8
0.2
2
72.8
44.1

Associated Gene:

Gene:
ARHGAP24
Ensembl Gene ID:
ENSAPLG00000006223
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043560
48480576 - 48621357
140782