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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48592750_48621177_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48592750 - 48621177
Intron Length:
28428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATCCCCTATTT
Flanking Amino Acid:
FKDEDETKPLGTIFLPGNRV
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
48.9
-0
1.9
68.69
41.7

Associated Gene:

Gene:
ARHGAP24
Ensembl Gene ID:
ENSAPLG00000006223
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043560
48480576 - 48621357
140782