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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_485948_486427_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
485948 - 486427
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTTTTT
5'SS Class:
major
3'SS Sequence:
TCTTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
VTVKKEGQNKGRLFYACDAP
Intron Amino Acid Position:
1236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
34.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
79.8
0.67
0.7
73.1
31.7
Minor 5ss
39.7
-1.2
3.2
58.4
46.1
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013744
474056 - 496680
22625