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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48700110_48700452_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48700110 - 48700452
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TCCATCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
CTCTCCATCATT
Flanking Amino Acid:
GALLEIPAAKAEKIASQMIT
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
57.6
0.19
1
53
33.7
Major PPT
77.1
0.61
0.9
73.6
35.5
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
51
0.11
2.1
72.18
45.2

Associated Gene:

Gene:
COPS4
Ensembl Gene ID:
ENSAPLG00000009737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010153
48698988 - 48706193
7206