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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48700569_48701891_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
48700569 - 48701891
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCCAACCCTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTAATTTAACT
Flanking Amino Acid:
MPHQKATTADGSSILDRAVI
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
59.5
0.21
1
60.7
35.2
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
63.3
0.5
1.5
76.06
40.4

Associated Gene:

Gene:
COPS4
Ensembl Gene ID:
ENSAPLG00000009737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010153
48698988 - 48706193
7206