Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48703841_48704562_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48703841 - 48704562

Intron Length:

722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTGCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CGTCTCTGAGCA

Flanking Amino Acid:

LVGIPLETGQKQYNVDYKLE

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

81.6

29.9

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

82.6

0.73

0.9

77.3

Minor 5ss

38.7

-1.3

2.7

47.6

34.4

Minor BPS

48.1

-0.1

1.7

58.34

40.9

Associated Gene:

Gene:

COPS4

Ensembl Gene ID:

ENSAPLG00000009737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010153

48698988 - 48706193

7206