Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48707024_48708292_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48707024 - 48708292

Intron Length:

1269

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

AATGTAATCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

GAAAATGTAATC

Flanking Amino Acid:

SSGSHKDLAGKCFLFFLLWT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

0.9

72.1

31.2

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

65.2

0.34

60.2

44.1

Minor 5ss

30.2

-2.3

3.1

36.2

34.2

Minor BPS

41.8

-0.6

46.94

35.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029432

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047577

48706933 - 48708366

1434