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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48734535_48734696_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48734535 - 48734696
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATCAAGA
Flanking Amino Acid:
PIVPAQTVKQVVPKPINPTS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
73.8
36.2
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
52.8
0.09
2.1
71.61
40.1

Associated Gene:

Gene:
LIN54
Ensembl Gene ID:
ENSAPLG00000009904
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010336
48720635 - 48740328
19694