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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48734895_48735909_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48734895 - 48735909
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACACATTACCT
Flanking Amino Acid:
AVLPAQYVTQLQQSSYVSIA
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.6
39.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.4
0.66
0.9
81.2
36.5
Minor 5ss
37.7
-1.4
3.6
56.7
47.5
Minor BPS
51.3
0.12
2
71.25
45

Associated Gene:

Gene:
LIN54
Ensembl Gene ID:
ENSAPLG00000009904
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010336
48720635 - 48740328
19694