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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48736002_48737332_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48736002 - 48737332
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAGTGTATAAAT
Flanking Amino Acid:
IQSQARLPFNGIIPSESANR
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.7
0.56
0.7
67.5
26
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
47
-0.1
2.1
67.21
43.3

Associated Gene:

Gene:
LIN54
Ensembl Gene ID:
ENSAPLG00000009904
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010336
48720635 - 48740328
19694