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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48737405_48738262_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48737405 - 48738262
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTTCCGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATGTTTATAAAT
Flanking Amino Acid:
CNCTKSLCLKLYCDCFANGE
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.3
0.75
0.8
80.6
31.4
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
53.5
0.19
1.7
72.01
38.9

Associated Gene:

Gene:
LIN54
Ensembl Gene ID:
ENSAPLG00000009904
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010336
48720635 - 48740328
19694