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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48738802_48739483_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48738802 - 48739483
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GGCTTCTCACAT
Flanking Amino Acid:
CLKNYCECYEAKIMCSSICK
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
45
-0.3
1.9
58.61
44.1

Associated Gene:

Gene:
LIN54
Ensembl Gene ID:
ENSAPLG00000009904
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010336
48720635 - 48740328
19694