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Intron Name: Anas_platyrhynchos_platyrhynchos_4_48739687_48740126_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48739687 - 48740126

Intron Length:

440

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAGTGAG

U12 Branch Point Sequence:

GTTGGAGTGAGT

Flanking Amino Acid:

PTPALSSGGGKLPFTFVTKE

Intron Amino Acid Position:

597

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

23.8

Major BPS

42.8

-0.4

1.6

34.8

43.8

Major PPT

86.1

0.81

0.9

84.6

Minor 5ss

41.2

-1

2.8

49.4

41.3

Minor BPS

35.2

-1

2.6

56.45

46.1

Associated Gene:

Gene:

LIN54

Ensembl Gene ID:

ENSAPLG00000009904

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010336

48720635 - 48740328

19694