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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48744160_48744524_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48744160 - 48744524
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CGCTCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTGACA
Flanking Amino Acid:
AGQHPIYLATGTSAQQLDAT
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.7
0.58
0.8
69
31.5
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
54.9
0.15
2
72.74
38.8

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638