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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48748803_48749357_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48748803 - 48749357
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
GTTTAGTTACCC
Flanking Amino Acid:
IIKVSDHNNRMHCSGLAWHP
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
81.6
0.71
0.8
78.2
36
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
48
-0.1
2.4
68.03
43.3

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638