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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48749501_48749984_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48749501 - 48749984
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTATGTTAATC
Flanking Amino Acid:
SPLRVLESHTRGILAIAWSM
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.7
0.56
0.9
69.4
35.3
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
59.1
0.26
2.1
74.32
36.8

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638