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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48751573_48752642_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48751573 - 48752642
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
TTCTCAATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGTTCTCAATT
Flanking Amino Acid:
IRRPVGASFSFGGKLVTFEN
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
64
47.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.6
0.67
0.9
70.7
38.8
Minor 5ss
39.3
-1.2
2.9
49.6
46.4
Minor BPS
64.1
0.52
1.5
76.5
40.5

Associated Gene:

Gene:
SEC31A
Ensembl Gene ID:
ENSAPLG00000010192
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010704
48744081 - 48777718
33638